John Huelsenbeck
Arrival and Departure
May 27 to June 7
From earlier appearances at the workshop
Scripts from 2017 morning programming sessions
Slides/Presentations (2013):
- Bayesian Phylogenetic Analysis, I
- Bayesian Phylogenetic Analysis, II
- Bayesian Phylogenetic Analysis, Supp.
Files Generated during the lecture/lab:
simwithdice.nex - a NEXUS file with the data patterns that the class generated using 10-sided dice
C++ MCMC estimation of coin’s bias
coin_flip_mcmc.py - a Python program that implements the MCMC for estimating a coin’s bias based on a number of heads and tails observed. This is not the code written during the lecture by John. It is an equivalent version of John’s C++ implementation written (by Mark Holder) using the Python programming language. If you download it, then you can run it (from a Terminal) with the command
python coin_flip_mcmc.py